Package index • raretrans

Package overview

raretrans raretrans-package: raretrans: Bayesian Priors for Matrix Population Models

Main functions

Core functions for filling structural zeros

fill_transitions(): Combine prior and data for transition matrix
fill_fertility(): Combine prior and data for fertility matrix
run_app(): Run the interactive Shiny application for Bayesian transition priors

Simulation

Simulate posterior matrices

sim_transitions(): Simulate population projection matrices

Credible intervals

Compute and plot credible intervals

transition_CrI(): Calculate beta credible intervals for all transition matrix entries
plot_transition_CrI(): Plot beta credible intervals for transition matrix entries
plot_transition_density(): Plot posterior beta density curves for all transition matrix entries

Helper functions

get_state_vector(): Helper functions for generating different priors
rdirichlet(): Dirichlet distributed random numbers

Data

L_elto: Transition and recruitment data for Lepanthes eltoroensis